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Not Very Humerus

Open-source bioinformatics blog

#python #sphinx

Thoughts On Sphinx

20 Mar 2018   By Matt Ralston

I’ve been exploring the Python documentation system for ReadTheDocs with Sphinx. It could be that I’m dense, but the sphinx-quickstart command seems horribly divorced from most of the automagic documentation goals of the Sphinx project. After following several guides1, 2 I noticed that only an index.rst had been created in...

#beginner #python #ruby #haskell #javascript #r

Beginner Python Arrays

14 Apr 2018   By Matt Ralston

Hello everyone! Today we'll be talking about essential array/list methods in different languages, reminding our readers of differences across languages. As beginner programmers, many of us are not aware of differences in the implementations of fundamental structures between languages. While we occasionally hear generalizations (perl is faster than python for...

#app #prose #meta #rant

Nebula Network

16 Apr 2018   By Matt Ralston

Hi everyone, have you ever wondered what would be a good idea for an app? Since I became a developer, now I have *some* of the tools to potentially create some basic web applications, command line tools, etc. For some developers who aren't creating regularly, it may seem like your...

#meta #foss #prose #methodology #rant

Open Source Hypocrisy

28 Jun 2018   By Matt Ralston

See the great thing about science and technology jobs is our transparency and focus on the problem, not on the finance. You could say that the tech sector is very scientific and rational. You see, we rationalize taking advantage of liberally licensed software. We value open source software because... it...

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Coding

#meta #prose #beginner #sysadmin

Data Science Workstation Build

22 Apr 2021   By Matt Ralston

In this blog post we’ll be reviewing the essentials of a mature workstation build, in this case, for graduate school. We begin with a look...

Science

#meta #prose #education #beginner

How Do I Become A Bioinformatician

05 Sep 2020   By Matt Ralston

I see plenty of posts on /r/bioinformatics of students or mid-career professionals asking what it takes to become a bioinformatician. What skills should I have?...

Coding

#python #beginner #noob

Sorting Out Modules In Python

26 Feb 2020   By Matt Ralston

Oh yeah, it’s all coming together If you’re comfortable with the differences between dictionaries and modules, skip ahead to the section about modules where I...

Science

#meta #prose #education #beginner

Data Engineers Vs Data Scientists

16 Feb 2020   By Matt Ralston

Introduction Big data is a meme, but there is a dichotomy worth discussing in the emerging interdisciplinary fields involving computer science. There is a choice...