Portfolio

kmerdb - k-mer profile distances, clustering, and more

Published: October 30, 2019

kmerdb is a PyPI project for assessing inter-sequence k-mer profile distances, de Bruijn grpahs, and more.

kmer.js - Precursor to kmerdb in d3.js

Published: January 18, 2018

A prototype library for k-mer profiles and statistics written in Javascript for NodeJS

Next Gen. Sequencing Complexity Index

Published: February 27, 2015

Uses algebra to create a percentage estimate of the proportion of maximum sequencing depth obtained from the data per-base

Circular-D3 - d3.js on circos plots

Published: August 21, 2014

An interactive circos plot on the C. acetobutylicum ATCC824 genome. Built with d3.js