Minimizers A Bioinformatic Primer
I did this stuff. It’s in a benchmarking folder on my computer. SHRiMP conda remains hard to use. Other aligners have not great performance. bbmap and bowtie2 remain the most convenient and respected aligners. It took maybe 20-50hrs of run time, maybe 10hrs to write the script.
This post is licensed under
CC BY 4.0
by the author.